PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39561.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 88aa    MW: 9872.23 Da    PI: 8.5531
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39561.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind57.73.3e-183488155
                  HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHH CS
  HSF_DNA-bind  1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvR 55
                  aFl+k++++++d++l+ ++sw ++  sfvv++++ fa++vLpk Fkh+nf+SFvR
    KHN39561.1 34 AFLSKTFDLVNDPSLDLIMSWGSSTVSFVVWNPTLFARHVLPKNFKHNNFSSFVR 88
                  69****************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-192988IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-63188IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-163388IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.2E-103558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-143588IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-107385IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-108688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MNLSSSSSQL TANFDKLNSF PHPLECLQGN PVPAFLSKTF DLVNDPSLDL IMSWGSSTVS  60
FVVWNPTLFA RHVLPKNFKH NNFSSFVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-1432882682Heat shock factor protein 1
5d5v_B8e-1432882682Heat shock factor protein 1
5d5v_D8e-1432882682Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961332e-78BT096133.1 Soybean clone JCVI-FLGm-15K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633065.11e-57PREDICTED: heat stress transcription factor A-3-like
SwissprotQ8GYY18e-30HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLA0A0B2RYK81e-57A0A0B2RYK8_GLYSO; Heat stress transcription factor A-3
STRINGGLYMA03G34900.11e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-31heat shock transcription factor A3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]